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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001548.1_28063_28592_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28063 - 28592
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCTGGTTTGACA
Flanking Amino Acid:
RNRAACFLKKEEYAKAASDA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
72.3
0.5
1.1
67.8
42.5
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
52.2
0.06
1.9
65.32
42

Associated Gene:

Gene:
UNC45B
Ensembl Gene ID:
ENSAPLG00000007713
Chromosome:
PEDO01001548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008034
16238 - 32716
16479