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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001548.1_28755_32707_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28755 - 32707
Intron Length:
3953

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGACGAC
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MAEMEDPIQLKEE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.2
58.3
40.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67
0.38
0.8
58.3
33.2
Minor 5ss
26
-2.8
4.4
39.2
41.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
UNC45B
Ensembl Gene ID:
ENSAPLG00000007713
Chromosome:
PEDO01001548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008034
16238 - 32716
16479