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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001548.1_32623_33864_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
32623 - 33864
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ACAATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTGTACAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.9
0.45
1
65.7
44.5
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
48.6
-0
2.2
76.83
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007709
Chromosome:
PEDO01001548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007992
32605 - 38704
6100