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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001554.1_2027_2733_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2027 - 2733
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
CCTCCCCAAGTC
Flanking Amino Acid:
DEATVDLEVSATGADPHLSL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
74.2
0.55
0.8
65.5
36.1
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
40.5
-0.7
2
47.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029822
Chromosome:
PEDO01001554.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046117
1107 - 3894
2788