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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001554.1_3235_3511_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3235 - 3511
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACCA
Flanking Amino Acid:
GLGVYLFRKQAAQSRELGES
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
45.6
-0.3
2.2
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029822
Chromosome:
PEDO01001554.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046117
1107 - 3894
2788