Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001586.1_113_270_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113 - 270

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACGGCA

5'SS Class:

major

3'SS Sequence:

CTTTCCTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACCCAT

U12 Branch Point Sequence:

GGTGCCTCACCC

Flanking Amino Acid:

TLGKALGGAAGGYTTGPKPL

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.2

62.8

37.7

Major BPS

52.1

0.05

1.2

62.1

35.8

Major PPT

81.9

0.72

0.7

Minor 5ss

29.6

-2.3

3.4

38.8

46.5

Minor BPS

48.4

-0.1

60.25

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015363

Chromosome:

PEDO01001586.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016019

3 - 930

928