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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001586.1_354_523_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
354 - 523
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GGGTCCTAACGT
Flanking Amino Acid:
HATGFLGPNGRGTDELLGVM
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
59.1
45.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88.5
0.87
0.6
84
24
Minor 5ss
29.1
-2.4
3.5
38.2
46.7
Minor BPS
45
-0.3
2.2
60.92
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015363
Chromosome:
PEDO01001586.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016019
3 - 930
928