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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001598.1_1873_2022_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1873 - 2022
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAG
U12 Branch Point Sequence:
TCCCCTATATCA
Flanking Amino Acid:
GFQPCLALICGPYYHGNPGV
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.6
44.7
Major BPS
55.5
0.14
1.5
65.8
41
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
40.2
-1.1
2.8
51.1
45
Minor BPS
46.8
-0.2
1.8
57.19
42.4

Associated Gene:

Gene:
MPND
Ensembl Gene ID:
ENSAPLG00000018303
Chromosome:
PEDO01001598.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026000
21 - 2260
2240