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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001603.1_1055_1284_F

Intron Information:

Intron Rank:
140444
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1055 - 1284
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAA|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAG
U12 Branch Point Sequence:
TCTCCCTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
48
-0.1
1.6
46.5
47
Major PPT
48.7
-0
3.2
80.6
36.9
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
46.2
-0.2
3.5
76.25
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025573
Chromosome:
PEDO01001603.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031865
21 - 1447
1427