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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001603.1_868_1022_F

Intron Information:

Intron Rank:
140446
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
868 - 1022
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAATTTCC
5'SS Class:
weak_major
3'SS Sequence:
GTTCTCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TGGACACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.2
62
37.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
79.7
0.67
0.8
70.3
36.3
Minor 5ss
44.4
-0.6
2.7
64.1
40
Minor BPS
49.8
0.07
2
72.09
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025573
Chromosome:
PEDO01001603.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031865
21 - 1447
1427