Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001614.1_1129_2950_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1129 - 2950

Intron Length:

1822

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTACTAAGT

5'SS Class:

weak_major

3'SS Sequence:

TACATCAAACTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATAGAA

U12 Branch Point Sequence:

AGTACATCAAAC

Flanking Amino Acid:

IVFGDMTNSFKKSVCCALAM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.5

0.06

1.1

54.1

42.6

Major BPS

62.2

0.3

Major PPT

53.3

0.08

40.1

Minor 5ss

36.8

-1.5

3.3

54.8

43.5

Minor BPS

46.5

-0.2

1.9

58.13

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029788

Chromosome:

PEDO01001614.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021599

457 - 3007

2551