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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001614.1_1136_1568_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1136 - 1568
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGGTGTGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTTCTTAAAT
Flanking Amino Acid:
FGDMTNSFVLNTSVNSSICP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.1
49.2
37.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90.4
0.91
0.6
85.1
22.6
Minor 5ss
31
-2.2
3.5
37
45.5
Minor BPS
74.1
0.83
1.3
83.22
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029788
Chromosome:
PEDO01001614.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036572
67 - 2061
1995