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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001614.1_1636_1865_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1636 - 1865
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTCTCCTTATTG
Flanking Amino Acid:
PGIDIEAEMTKFAYYYVGIG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82
0.72
0.8
76.7
30.4
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
61.9
0.24
1.7
63.81
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029788
Chromosome:
PEDO01001614.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036572
67 - 2061
1995