About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001626.1_14517_14592_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14517 - 14592
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCACGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TGGTCCCCACGG
Flanking Amino Acid:
LGHMHPEMLQVMDEIKAGIQ
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
60.4
0.24
1
55
35
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
38.9
-0.9
2.2
44.95
46.7

Associated Gene:

Gene:
AGXT
Ensembl Gene ID:
ENSAPLG00000013858
Chromosome:
PEDO01001626.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014462
14109 - 17227
3119