Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001626.1_16381_16487_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16381 - 16487

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGCAGC

5'SS Class:

major

3'SS Sequence:

TCTGTGCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACCGAC

U12 Branch Point Sequence:

GGGGCCCTACCG

Flanking Amino Acid:

REGLAMLAEMGLESSWERHR

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

64.9

41.1

Major BPS

0.03

1.2

50.1

36.7

Major PPT

67.7

0.4

59.4

41.8

Minor 5ss

34.4

-1.8

2.9

39.9

40.3

Minor BPS

43.2

-0.6

45.44

46.4

Associated Gene:

Gene:

AGXT

Ensembl Gene ID:

ENSAPLG00000013858

Chromosome:

PEDO01001626.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014462

14109 - 17227

3119