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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001626.1_18945_19721_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18945 - 19721
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
CCTCCCTCAGCA
Flanking Amino Acid:
HFIPASPRCWRSSAHLPVLK
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
82.5
0.73
0.8
73.9
36.1
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
49.6
-0
1.9
61.11
44.7

Associated Gene:

Gene:
MAB21L4
Ensembl Gene ID:
ENSAPLG00000013803
Chromosome:
PEDO01001626.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014375
17785 - 21271
3487