Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_149581_153338_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

149581 - 153338

Intron Length:

3758

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTCAGGCAC

5'SS Class:

weak_major

3'SS Sequence:

CTTCCTACAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCCTAC

U12 Branch Point Sequence:

CTTTCCAGAAGG

Flanking Amino Acid:

PSAALEVTGPSAFRWFQ*

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.2

0.05

1.4

48.2

42.4

Major BPS

58.9

0.22

1.3

58.4

Major PPT

49.8

-0

1.7

59.7

35.4

Minor 5ss

29.4

-2.4

3.3

43.6

Minor BPS

48.4

-0.2

2.1

61.19

46.2

Associated Gene:

Gene:

CXXC5

Ensembl Gene ID:

ENSAPLG00000021528

Chromosome:

PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019678

149558 - 159135

9578