About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_214196_216015_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
214196 - 216015
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTGTTAAGT
Flanking Amino Acid:
IARIYKTDREKYNRIAREWT
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.9
0.61
1
70.6
39.3
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
55.8
0.26
2.3
79.89
42.3

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015366
214150 - 234675
20526
ENSAPLT00000045193
214086 - 232393
18308
ENSAPLT00000037663
214086 - 228674
14589
ENSAPLT00000021920
214086 - 232393
18308
ENSAPLT00000021794
214086 - 232393
18308