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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_216110_223441_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
216110 - 223441
Intron Length:
7332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACAAGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AGTACTCTAATG
Flanking Amino Acid:
ILKLFGTVLTVLLSICSLLC
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.1
58.7
38.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
83.8
0.76
0.7
78
30.8
Minor 5ss
31.5
-2.1
3.7
45.1
44.8
Minor BPS
49.6
-0.1
1.7
56.13
39.3

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045193
214086 - 232393
18308
ENSAPLT00000037663
214086 - 228674
14589
ENSAPLT00000021794
214086 - 232393
18308