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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_227658_227745_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
227658 - 227745
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CTACACTGAAAT
Flanking Amino Acid:
PTDYPFKPPKVAFTTRIYHP
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
67.6
0.44
1.2
75
40
Major PPT
85.3
0.79
0.7
80.2
25.1
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
48.6
-0
1.8
66.25
43.2

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021794
214086 - 232393
18308
ENSAPLT00000017766
219037 - 232393
13357
ENSAPLT00000045193
214086 - 232393
18308
ENSAPLT00000015366
214150 - 234675
20526
ENSAPLT00000037663
214086 - 228674
14589
ENSAPLT00000021920
214086 - 232393
18308