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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_227824_227913_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
227824 - 227913
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCATTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAACA
Flanking Amino Acid:
FHWQATIMGPNDSPYQGGVF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
78.1
34
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
84.1
1.07
1.4
93.02
25.5

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045193
214086 - 232393
18308
ENSAPLT00000037663
214086 - 228674
14589
ENSAPLT00000021920
214086 - 232393
18308
ENSAPLT00000015366
214150 - 234675
20526