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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_227946_228605_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
227946 - 228605
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGACTC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTTCTCCAAACT
Flanking Amino Acid:
MHMMFHWQATIMG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
59.7
39.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
92.6
0.96
0.6
91.5
19.7
Minor 5ss
32.4
-2
3.2
39.3
40
Minor BPS
49.5
0.04
2
73.51
43.3

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037663
214086 - 228674
14589