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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_227946_232329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
227946 - 232329
Intron Length:
4384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CTTCTCCAAACT
Flanking Amino Acid:
QCSAGPVGDDMFHWQATIMG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
92.6
0.96
0.6
91.5
19.7
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
49.5
0.04
2
73.51
43.3

Associated Gene:

Gene:
UBE2D2
Ensembl Gene ID:
ENSAPLG00000014740
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045193
214086 - 232393
18308
ENSAPLT00000021920
214086 - 232393
18308
ENSAPLT00000015366
214150 - 234675
20526