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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_306683_307011_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
306683 - 307011
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGGACC
Flanking Amino Acid:
KLRDVATREEVNIRRENLIE
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
0.9
69.9
30.9
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
52.6
0.06
1.8
68.38
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013069
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013662
306235 - 321790
15556