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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_308013_311002_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
308013 - 311002
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
ATCTCCTGAGTC
Flanking Amino Acid:
IFSILEQRVEASEEKIRTTE
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
71
0.47
0.8
62.1
34.8
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
55.7
0.16
1.7
65.7
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013069
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013662
306235 - 321790
15556