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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_311465_311658_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
311465 - 311658
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CTTGTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAG
U12 Branch Point Sequence:
TGAGGCATGACT
Flanking Amino Acid:
DRIGEYVQLHGGLDLIEQLL
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
49.4
-0
1.6
48.8
46.3
Major PPT
78.6
0.64
0.8
73.3
31.7
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
46
-0.2
2.1
65.71
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013069
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013662
306235 - 321790
15556