About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_316625_318310_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
316625 - 318310
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTTGTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTGTGCTGAAAT
Flanking Amino Acid:
RGRYREFYQCDFDIAGQFDP
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
67.8
39.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
82.3
0.73
0.8
80.6
31.5
Minor 5ss
40.4
-1.1
3
50
46.2
Minor BPS
49.7
0.05
2
69.93
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013069
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013662
306235 - 321790
15556