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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_349927_351076_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
349927 - 351076
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TTCCCAGTAACA
Flanking Amino Acid:
PSQQFHVSKQVKQPNTDWLP
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
61.1
0.28
1
67
29.8
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
49.9
-0
2.3
70.02
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014100
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014680
347401 - 352871
5471