About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001633.1_351314_351546_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
351314 - 351546
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTAGTGCT
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CCTTCCCCAAGC
Flanking Amino Acid:
RLCTLVTPVSEFQKASAGAN
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
71.3
38.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
83.9
0.76
0.7
75.9
32.7
Minor 5ss
32.2
-2
3.1
44.5
42.8
Minor BPS
46.3
-0.3
2.2
59.14
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014100
Chromosome:
PEDO01001633.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014680
347401 - 352871
5471