Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001683.1_18213_18260_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18213 - 18260

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TAT|GCATGCGAC

5'SS Class:

major

3'SS Sequence:

CTCTGCTGATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATGCAA

U12 Branch Point Sequence:

TCTCTGCTGATT

Flanking Amino Acid:

ETEALEGRIYKPWIFFLRET

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.4

62.8

43.5

Major BPS

49.7

-0

1.3

61.4

36.2

Major PPT

62.6

0.29

62.4

38.5

Minor 5ss

34.8

-1.7

4.3

53.3

44.6

Minor BPS

43.5

-0.4

2.2

64.32

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030276

Chromosome:

PEDO01001683.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035840

14568 - 20694

6127

ENSAPLT00000019172

13389 - 20754

7366