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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001683.1_18447_20238_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18447 - 20238
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTACCTAACTT
Flanking Amino Acid:
TIFHGQLLSQVTCITCNYKS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.9
0.58
0.9
67.1
38.8
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
51.3
0.12
2
73.21
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030276
Chromosome:
PEDO01001683.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021555
6692 - 20782
14091