Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001683.1_6827_14615_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6827 - 14615

Intron Length:

7789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTGTCC

5'SS Class:

major

3'SS Sequence:

TGTTTCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCACAA

U12 Branch Point Sequence:

TGTTTCTTTACA

Flanking Amino Acid:

RISEKQLQAQDVRSPALNAA

Intron Amino Acid Position:

374

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.1

56.5

37.3

Major BPS

68.5

0.46

75.3

29.8

Major PPT

89.5

0.89

0.7

Minor 5ss

31.6

-2.1

3.4

42.4

44.6

Minor BPS

71.3

0.66

1.6

79.84

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030276

Chromosome:

PEDO01001683.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021555

6692 - 20782

14091