Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001693.1_970_1125_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

970 - 1125

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTTAAGGGG

5'SS Class:

weak_major

3'SS Sequence:

GAAAAAAGGGGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTATGAG

U12 Branch Point Sequence:

GAGCCCGGTACA

Flanking Amino Acid:

LEVALSLVGGVWEG*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.6

0.13

1.3

44.1

43.6

Major BPS

60.7

0.27

1.6

59.7

46.7

Major PPT

36.5

-0.7

1.6

21.9

35.5

Minor 5ss

23.9

-3

3.2

21.5

37.6

Minor BPS

39.8

-0.8

2.2

47.82

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029328

Chromosome:

PEDO01001693.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047537

163 - 1139

977