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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001696.1_2159_2502_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2159 - 2502
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCTGACCATCC
Flanking Amino Acid:
DGTVTLELLDELTHEFLQIL
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
79.5
0.66
0.8
73.3
31.7
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
33.6
-1.2
2.3
44.11
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028904
Chromosome:
PEDO01001696.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034616
316 - 3411
3096