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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001708.1_3201_3387_F

Intron Information:

Intron Rank:
129533
Intron Class:
major
Intron Phase:
Intron Coordinates:
3201 - 3387
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
CTGCCCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
59
0.22
1
66.7
30
Major PPT
74.6
0.55
0.8
68.2
32.2
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
45
-0.4
1.9
53.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019712
Chromosome:
PEDO01001708.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038615
21 - 5304
5284
ENSAPLT00000021124
21 - 5304
5284
ENSAPLT00000017945
21 - 5304
5284
ENSAPLT00000048257
21 - 5304
5284