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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001722.1_1169_1289_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1169 - 1289
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCTC
5'SS Class:
major
3'SS Sequence:
TTGTGTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
GAGCCCCCAATT
Flanking Amino Acid:
PHVVELKDFQWDSE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
75.5
0.57
0.9
69.9
36.6
Minor 5ss
28.5
-2.5
3.6
40.5
46
Minor BPS
46.5
-0.1
1.9
61.06
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024222
Chromosome:
PEDO01001722.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047210
21 - 1495
1475