Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001722.1_935_1027_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

935 - 1027

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGGGG

5'SS Class:

major

3'SS Sequence:

CTTCTCCGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

CAGGGCTCCAGG

Flanking Amino Acid:

YATVYKAYGKKDTREVVAVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

54.8

44.4

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

68.4

0.41

65.3

36.1

Minor 5ss

21.8

-3.3

3.4

28.2

Minor BPS

31.1

-1.6

2.2

27.56

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024222

Chromosome:

PEDO01001722.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047210

21 - 1495

1475