Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001750.1_172_501_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

172 - 501

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCTGGCCCA

5'SS Class:

weak_major

3'SS Sequence:

CGATGCCACCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

GTCCCCACGATG

Flanking Amino Acid:

PRFEPWRDYLGVPMVPPADP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.6

0.18

1.4

47.9

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

48.4

-0

1.1

41.9

37.7

Minor 5ss

22.4

-3.2

3.8

23.6

36.8

Minor BPS

43.1

-0.6

1.8

46.24

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028012

Chromosome:

PEDO01001750.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044761

128 - 874

747