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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001751.1_313_436_F

Intron Information:

Intron Rank:
131546
Intron Class:
major
Intron Phase:
Intron Coordinates:
313 - 436
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CCCCCTCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TAATCCTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
61.2
0.25
1
58.6
30.5
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
45.9
-0.2
3.6
78.2
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020615
Chromosome:
PEDO01001751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043561
21 - 1120
1100
ENSAPLT00000040911
21 - 1120
1100
ENSAPLT00000023492
21 - 1120
1100