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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001765.1_867_1140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
867 - 1140
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CATCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATCT
Flanking Amino Acid:
NCEELIPEYLNFMRGVVDSE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
54.3
0.21
1.8
75.24
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030592
Chromosome:
PEDO01001765.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031005
382 - 4482
4101