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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001777.1_825_1344_F

Intron Information:

Intron Rank:
148345
Intron Class:
major
Intron Phase:
Intron Coordinates:
825 - 1344
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CCGTCTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
TTCTCCGTCTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
73.3
0.53
0.8
64.7
36.4
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
39.1
-0.7
3.8
75.16
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029866
Chromosome:
PEDO01001777.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025336
21 - 3498
3478