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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001778.1_47105_47213_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47105 - 47213
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CAAAAATTAACT
Flanking Amino Acid:
DLENLGTSMNGIDLELYTPN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
85.3
0.79
0.7
79.7
25.9
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
49.2
0.02
1.8
65.68
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006840
Chromosome:
PEDO01001778.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007106
46967 - 49826
2860