Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001778.1_47253_48802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47253 - 48802

Intron Length:

1550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

ATGACTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTACGTATCT

Flanking Amino Acid:

LELYTPNDTKECSWQTLQCY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

23.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

66.3

0.37

62.6

43.5

Minor 5ss

40.5

-1.1

2.7

50.7

45.7

Minor BPS

53.9

0.2

2.4

84.92

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006840

Chromosome:

PEDO01001778.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007106

46967 - 49826

2860