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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001802.1_2654_2765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2654 - 2765
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTGTCGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGAGGCTGCAGT
Flanking Amino Acid:
LWVDGSSFNLTFPVQGGAEC
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
71.4
40.3
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
74.7
0.56
0.9
68.7
37.2
Minor 5ss
32.8
-2
2.9
42
37.6
Minor BPS
37.3
-0.9
2.4
53.99
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011899
Chromosome:
PEDO01001802.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012378
2515 - 3639
1125