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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001802.1_2867_3630_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2867 - 3630
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTACTACTA
5'SS Class:
weak_major
3'SS Sequence:
CTTTGCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGCTTCTGACTG
Flanking Amino Acid:
MIIDFLRVLKGNV
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.1
51.1
39.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71
0.47
0.9
62.4
38.9
Minor 5ss
36.4
-1.5
3.4
49.3
42
Minor BPS
45.6
-0.4
1.7
46.56
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011899
Chromosome:
PEDO01001802.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012378
2515 - 3639
1125