Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001811.1_3200_3410_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3200 - 3410

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTACGGCGC

5'SS Class:

major

3'SS Sequence:

CTCCGCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAACCAA

U12 Branch Point Sequence:

CGAGAACCAAGG

Flanking Amino Acid:

LVHQMTELCWEKCMDKPGPK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.2

50.6

42.8

Major BPS

42.4

-0.4

1.3

44.8

38.1

Major PPT

75.5

0.57

0.8

68.7

31.7

Minor 5ss

29.6

-2.3

3.4

32.9

42.2

Minor BPS

27.8

-1.8

1.9

24.27

34.6

Associated Gene:

Gene:

TIMM8A

Ensembl Gene ID:

ENSAPLG00000019380

Chromosome:

PEDO01001811.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024072

195 - 3572

3378