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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_10259_12073_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10259 - 12073

Intron Length:

1815

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

CCCCCCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTCAT

U12 Branch Point Sequence:

ATCTCAGTCATT

Flanking Amino Acid:

GEVEKHSSQKDYSKGFGGRY

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.8

1.13

0.7

81.1

32.3

Major BPS

64.7

0.37

1.2

39.8

Major PPT

66.9

0.38

0.7

57.1

27.1

Minor 5ss

24.2

-3

3.6

33.3

41.7

Minor BPS

43.5

-0.4

2.5

66.91

44.3

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025900

5824 - 18276

12453

ENSAPLT00000019842

5824 - 17638

11815

ENSAPLT00000009529

5824 - 18276

12453