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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_12185_12571_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12185 - 12571

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

CCCATGACTGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

ATCCCCATGACT

Flanking Amino Acid:

SQVEKHDSQKDYSAGFGGKF

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

74.8

38.1

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

54.4

0.1

1.1

52.5

35.6

Minor 5ss

-0.9

49.2

Minor BPS

0.4

1.7

76.43

39.7

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025900

5824 - 18276

12453

ENSAPLT00000019842

5824 - 17638

11815

ENSAPLT00000009529

5824 - 18276

12453