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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_13452_14456_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13452 - 14456
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAA
U12 Branch Point Sequence:
CCTTGCCTAACA
Flanking Amino Acid:
YGVQKDRVDKSAAGFNEMAS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
49.8
-0
1.1
59
36.1
Major PPT
88.5
0.87
0.7
83.8
24.3
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
52.7
0.08
2.1
67.55
44.9

Associated Gene:

Gene:
HCLS1
Ensembl Gene ID:
ENSAPLG00000009127
Chromosome:
PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025900
5824 - 18276
12453
ENSAPLT00000019842
5824 - 17638
11815
ENSAPLT00000009529
5824 - 18276
12453