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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001830.1_14527_14964_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14527 - 14964

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATAA

5'SS Class:

strong_major

3'SS Sequence:

ATCTCCACAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

ATCTCCACAGCA

Flanking Amino Acid:

SYEKTKPVEAASSSTSSLRS

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.1

24.3

Major BPS

72.5

0.56

1.2

39.9

Major PPT

66.1

0.36

0.9

60.7

34.4

Minor 5ss

31.8

-2.1

37.8

Minor BPS

47.4

-0.2

63.38

42.5

Associated Gene:

Gene:

HCLS1

Ensembl Gene ID:

ENSAPLG00000009127

Chromosome:

PEDO01001830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009529

5824 - 18276

12453

ENSAPLT00000025900

5824 - 18276

12453

ENSAPLT00000019842

5824 - 17638

11815